Day 1 July 15
GENIE Progress Report
Ken Kehl (DFCI)
P01 Updates
Ken Kehl (DFCI)
Niki Schultz
Jian Carrot-Zhang (MSK)
Business Development Updates
Tony Wu (GCC)
Bayer NSCLC HER2 Study Update
Ken Kehl (DFCI)
Introduction to GP3
Kelli Rasmussen (GCC)
Scaling Clinical Data Abstraction at Providence: GP3 Update
Jake VanCampen (PROV)
Building a Scalable Framework for AI-Assisted Clinical Data
Curation UHN’s Experience with the GENIE GP3 Pilot
Emily Van de Laar (UHN)
Speaker 1: Environmental Exposures, Susceptibility and
Early Onset Cancer Risk
Mary Beth Terry (COLU)
Speaker 2: Epigenetic fingerprints link early onset colorectal cancer to pesticide exposure
Jose Seoane (VHIO)
Speaker 3: Multimodal Integration in Oncology: What are we actually learning?
Hakim Benikrane (GRCC)
Speaker 4: Role of the exposome in clinical cancer care and survival outcomes
Marilyn Hammer (DFCI)
Roundtable Discussions
Led by Co-Chair: Maud Kamal (GRCC)
Expanding The AACR Project GENIE Mission
Ken Kehl / Shawn Sweeney
GENIE Expansion Breakout Sessions
Breakout Session 1: Expanded Testing
Shannon J McCall (DUKE)
Breakout Session 2: Expanded Inclusion
Ken L Kehl (DFCI)
Breakout Session 3: Data Access
Phil Bedard (UHN)
Breakout Session 4: Implementation
Brady Bernard (PROV)
GENIE Expansion Discussion Debrief
Ken Kehl / Shawn Sweeney
Day 2: July 16
GENIE Expansion Discussion Part 2: Report out and final discussions
Ken Kehl / Shawn Sweeney
Speaker 5:
Digital Pathology Experience at Johns Hopkins:
Challenges and Opportunities
Alex Baras (JHU – Virtual)
Speaker 6: Biomarker Benchmarking Across Ancestral
Populations
Amin Nassar (YALE – Virtual)
Curated Reference Datasets Improve Genetic Ancestry
Calls in Cancer Patient Cohorts
Nick Pannunzio (UCI)
Speaker 8: Local ancestry pipeline pilot update from MSK
(site-specific deployment)
Tomin Perea-Chamblee (MSK
Roundtable Discussions
Led by Co-Chair: Ben Herzberg (COLU)
Lightning Talk 1: Chromosome 19p Associates with
NSCLC Patient Outcomes in a Histology-Specific and
Dose-Dependent Manner
Samyukta Mallick (COLU)
Lightning Talk 2: Clinicogenomic Landscape and
Functional Implications of PTPN11 (SHP2) Alterations in
Glioblastoma
Mark Sowers (JHU)
Show-and-Tell Presentation 1: AI-Compare: A Desktop
Application for Machine Learning Analysis of Prostate
Cancer Progression
San Chu (LSU)
Show-and-Tell Presentation 2: Building the Sylvester Data
Portal (SDP): A Scalable Multi-Vendor Clinicogenomic
Harmonization Platform for Translational Research
Oliver Mazariegos (UMIAMI)
Show-and-Tell Presentation 3:
Cancer Type Prediction Harmonizing AACR GENIE Data
with Bayesian Neural Network
Mookyong Son (MSK
Show-and-Tell Presentation 4: Reading Tissues at Cellular
Resolution: A Practical Toolkit for Spatial Omics
Ali Hamraoui (GRCC – Virtual)
Show-and-Tell Presentation 5: Automated extraction of
structural data from clinical notes
Anna Pedrola Gomez (VHIO – Virtual)
Modern Infrastructure: Powering the Future of GENIE
Shawn Sweeney, Kelli Rasmussen & Anum Mian (GCC)